Bactopia

Nextflow DSL2 pipeline for the complete analysis of bacterial genomes

bactopia-py Public
A Python package for working with Bactopia results.

Makefile 1 MIT 0 0 5 Updated Aug 8, 2022
bactopia Public
A flexible pipeline for complete analysis of bacterial genomes

Nextflow 173 MIT 38 41 (1 issue needs help) 0 Updated Aug 3, 2022
bactopia.github.io Public
Bactopia Documentation

Jinja 1 MIT 3 0 0 Updated Jul 28, 2022
bactopia-wdl Public
A WDL wrapper around Bactopia

wdl 0 MIT 0 0 0 Updated Jul 26, 2022
bactopia-mqc Public
Aggregate results from bioinformatics analyses across many samples into a single report.

Python 0 GPL-3.0 479 0 0 Updated Jul 20, 2022
bactopia-tests Public
Contains data used by Bactopia for testing.

Standard ML 3 MIT 1 0 0 Updated Jul 8, 2022
bactopia-results Public
A repository for example result files generated by Bactopia

0 MIT 0 0 0 Updated Mar 1, 2022
bactopia-msystems-2020 Public
Scripts and data associated with Bactopia publication in mSystems

HTML 0 MIT 0 0 0 Updated Nov 30, 2021
bactopia-datasets Public
A list of curated species-specific datasets.

1 MIT 0 0 0 Updated Apr 13, 2021

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