cram

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Here are 14 public repositories matching this topic...

samtools / htslib

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C library for high-throughput sequencing data formats

bioinformatics ngs sam vcf bam htslib bcf cram

Updated Dec 16, 2022
C

samtools / htsjdk

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A Java API for high-throughput sequencing data (HTS) formats.

java genomics ngs sequencing sam vcf dna java-api fasta bam cram

Updated Dec 21, 2022
Java

divonlan / genozip

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Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too

compression gzip genomics sam vcf fasta bam fastq gvf samtools bwa 23andme cram bgzip

Updated Dec 21, 2022
C

Griffan / VerifyBamID

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VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

bioinformatics genetics biostatistics bam qc-analysis dna-sequences contamination cram

Updated Aug 21, 2022
mupad

sbslee / fuc

Sponsor

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Frequently used commands in bioinformatics

visualization api cli bioinformatics sam vcf fasta gtf bed maf bam fastq cram gff

Updated Aug 23, 2022
Python

gregzanch / cram

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cram is a computational room acoustics module to simulate and explore various acoustic properties of a modeled space

simulation fdtd webapp raytracer ray-tracing acoustics cram room-impulse-response image-source-model room-acoustics computational-acoustics

Updated Dec 11, 2022
TypeScript

biosails / pheniqs

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Fast and accurate sequence demultiplexing

autocomplete tagging sequencing barcode sam robust tag bam fastq multiplexing cram demultiplexing classifiers

Updated May 2, 2022
C++

Nicoretti / prysk

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Functional tests for command line applications

cli snapshot-testing functional-testing hacktoberfest cram cli-testing prysk

Updated Dec 19, 2022
Python

brentp / bpbio

Sponsor

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basepair bio: a single binary with many useful genomics subtools.

genomics bam high-throughput-sequencing cram structural-variation genomics-visualization

Updated Jul 3, 2019
Nim

machinekoder / Fabrikator-Mini-CRAMPS

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Machinekit configuration for the Fabrikator Mini + CRAMPS board

3d-printing machinekit cram machinekit-configuration fabrikator-mini tinyboy

Updated Mar 28, 2017
Python

REGOVAR / Pirus

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a REST service to launch pipeline

bioinformatics pipeline genetics variants bam cram

Updated Jun 8, 2017
Python

Rapsssito / fasta2bam

Sponsor

Star

Tool for generating alignment files (SAM/BAM/CRAM) from FASTA files.

simulator genomics sam alignment fasta bam cram

Updated Nov 17, 2022
Python

nikolausschueler / tapconverters

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Convert output from Cram (and some other tools) to TAP (Test Anything Protocol)

python vagrant testing-tools vagrantfile cram

Updated May 29, 2019
Python

mtso / cram

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Line cramming/un-cramming utility

packer mangle cram uncram

Updated Jun 11, 2017
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