pacbio

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Structural variation caller using third generation sequencing

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Fast and accurate de novo assembler for long reads

Long read / genome alignment software

A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.

IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

Sequana: a set of Snakemake NGS pipelines

Ultra-fast de novo assembler using long noisy reads

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Technology agnostic long read analysis pipeline for transcriptomes

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

An accurate and ultra-fast hybrid genome assembler

A fast tool for hybrid genome assembly of long and short reads

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

Long Reads Annotation pipeline

Reference-based transcript discovery from long RNA read

Long-reads Gap-free Chromosome-scale Assembler