Official git repository for Biopython (originally converted from CVS)
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Official code repository for GATK versions 4 and up
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
A collaboratively written review paper on deep learning, genomics, and precision medicine
Data intensive science for everyone.
tools for working with genome variation graphs
Python and C++ code for reading and writing genomics data.
Scripts to download genomes from the NCBI FTP servers
A high-performance, Pythonic language for bioinformatics
Python library to handle Gene Ontology (GO) terms
A comprehensive tutorial about GWAS and PRS
Python library to facilitate genome assembly, annotation, and comparative genomics
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
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