Addon and nodes for working with structural biology and molecular data in Blender.
COBRApy is a package for constraint-based modeling of metabolic networks.
Ribbon diagrams of proteins in #golang.
Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.
COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
Computational synthetic biology: Predicting DNA edits for bioengineering
Python package to study microbial communities using metabolic modeling.
Experimental tech-demo for PhD thesis in Scientific Markdown; official:
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
Analysis of non-covalent interactions in MD trajectories
Contact map analysis for biomolecules; based on MDTraj
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
A Python parser for the BRENDA database
Community-curated resources for research at the intersection of AI and molecular sciences
A VR app which allows creation and manipulation of dynamic models of polypeptides. Focus is fun and learning.
genomics, biochemistry, biotechnology, cell biology, biophysics, ecology
Wetlab Calculator
Virtual screening on PriA-SSB and RMI-FANCM with the LifeChem library
Data processing and simulation for serial crystallography
Add a description, image, and links to the biochemistry topic page so that developers can more easily learn about it.
To associate your repository with the biochemistry topic, visit your repo's landing page and select "manage topics."