Here are
21 public repositories
matching this topic...
-
Updated
Feb 12, 2021
-
JavaScript
Fast k-mer based tool for multi locus sequence typing (MLST)
-
Updated
Sep 3, 2020
-
Python
Collection of scripts for bacterial genomics
Bacterial Isolate Genome Sequence Database (BIGSdb) - A platform for gene-by-gene bacterial population annotation and analysis.
-
Updated
Jul 30, 2021
-
Perl
all methods related to Enterobase
-
Updated
Jul 26, 2021
-
Python
Ultrafast sequence typing and gene detection from NGS raw reads
An easy way of MLSTyping your genomes in R.
List and download schemes from pubMLST.org and other BIGSDB servers
-
Updated
Oct 5, 2020
-
Python
In silico multi-locus sequence typing (MLST) for bacterial genomes
MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
-
Updated
Jan 18, 2021
-
Python
Rapid, in silico characterization of Bacillus cereus group isolates using WGS data
In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
-
Updated
Apr 12, 2021
-
Python
A collection of bioinformatics tools for use with galaxy written at Quadram Institute
-
Updated
Mar 26, 2021
-
HTML
bacterial read typer 🧬 🛹 🦠
-
Updated
Jul 30, 2021
-
Python
A tool for conducting a gene screen on assemblies, producing an SRST2-like output.
-
Updated
Aug 1, 2020
-
Python
A companion application for analyzing and viewing BTyper output files in aggregate
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
-
Updated
Jul 14, 2021
-
Python
Epitypification pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
-
Updated
Jul 30, 2021
-
Nextflow
Determine the MLST sequence type for samples using PubMLST schemes in the IRIDA system
-
Updated
Jun 20, 2019
-
Java
The MAB MLST Scheme for Mycobacterium absecssus
Improve this page
Add a description, image, and links to the
mlst
topic page so that developers can more easily learn about it.
Curate this topic
Add this topic to your repo
To associate your repository with the
mlst
topic, visit your repo's landing page and select "manage topics."
Learn more
You can’t perform that action at this time.
You signed in with another tab or window. Reload to refresh your session.
You signed out in another tab or window. Reload to refresh your session.