Welcome to the Galaxy Community Hub
The meeting point where you can find curated documentation for all things Galaxy
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- Use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- Run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- Manage data by sharing and publishing results, workflows, and visualizations.
- Ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
Galaxy for
SCIENTISTS
Galaxy for
TRAINERS
Galaxy for
TOOL AUTHORS
Galaxy for
DEVELOPERS
Galaxy for
ADMINS
News
Exporting structured data like RO-Crate or BioComputeObjects
Galaxy has a very powerful and extensible exporting framework that now can export RO-Crate and BioComputeObjects
Success Story: “TIaaS: Training Infrastructure as a Service”
TIaaS allows trainees’ jobs to be run preferentially and avoids long execution times, depending on the server load. By providing access to this service, the Galaxy Training Network ensured that TIaaS would be freely available to anyone and facilitated access to an extensive catalogue of FAIR training materials.
Natural Language Processing survey
Galaxy/LAPPS User Survey on Natural Language Processing capacity needs
Stronger together: FAIR-EASE and EuroScienceGateway join forces
Two Horizon Europe projects directed toward the development and deployment of the European Open Science Cloud (EOSC)—FAIR-EASE and EuroScienceGateway (ESG)—have agreed to closely cooperate over the next three years.
How tools are created and maintained in Galaxy
A short summary about Galaxy tools development, maintenance and deployment.
Events
May 22 - May 26GTN Smörgåsbord 2023
We are happy to announce that the next edition of the GTN Smörgåsbord training event will take place on May 22-26, 2023! It will once again be free, online, self-paced, and choose-your-own-adventure style. It will feature all the content of previous editions, plus lots more!
Mar 16Galaxy Community Call: Collections and assembly pipelines
A forum to share updates and discuss community-wide topics
Mar 30Galaxy Metabolomics Community Call
A forum to share updates and discuss community-wide topics.
Apr 13Galaxy Community Call: AnVIL Project
A forum to share updates and discuss community-wide topics
Apr 25 - Apr 26Galaxy Introduction for Life Scientists
This 1.5-day course will give a general introduction on the galaxy web-page structure, how to import data, run tools, share analyses and build workflows. Participants will run a whole NGS analysis using an RNA-seq dataset as an example.
Recent Videos
How Galaxy Imaging makes cloud-based image analysis possible
Presented at the Euro-BioImaging Virtual Pub
How to launch Galaxy workflows from Dockstore
Dockstore and Galaxy are now integrated
Galaxy 21.09 Release Highlights
New Toolbox; Change Datatype + DBkey; Remote Files Enhancements
Image analysis in Galaxy - pain points and lessons learnt
October 28 Galaxy Developer Round Table
Fast, scalable, free, & user-friendly Galaxy workflows for reference genome assembly
The latest version of VGP's pipeline has been ported to Galaxy.
Blog
Mental Health Assessment Tools
Tenth blog post presenting the Outreachy project on Mental Health
Why we should support the underrepresented communities
Ninth blog post presenting the Outreachy project on Mental Health
Galaxy + Nextflow at CFSAN, FDA.
How Nextflow pipelines are integrated into Galaxy project at CFSAN, FDA.
Galaxy Well-being and Mental Health Project Survey Result Highlights
Eighth blog post presenting the Outreachy project on Mental Health
Careers
Computational Software Scientist
Science and Technology Facilities Council, Rutherford Appleton Laboratory (RAL), Harwell, Oxfordshire, OR, Daresbury Laboratory, Warrington, WA4 4AD (with regular travel to RAL). Apply by Mar 24
Research Associate in Biomedical Data Science
Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore. Maryland, United States
New Platforms
Standard tools for DNA/RNA analysis and additional ones on project demands.
NGS data analysis focusing on microRNAs and their sequence variants—isomiRs.
An integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.
The Indian community server.
Determine the composition of a viral population.
A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.
BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).
Recent Publications
Martin, D.P., Lytras, S., Lucaci, A.G., Maier, Gruning, B. ... Kosakovsky Pond S.L. (2022). bioRxiv.
Giraldo-Calderón, G. I., Harb, O.S., Kelly S.A., and Rund S. SC, Roos D.S., McDowell M.A. (2022). Current Opinion in Insect Science.
Galaxy workflows for fragment-based virtual screening: A case study on the SARS-CoV-2 main protease
Bray, S., Dudgeon, T., Skyner, R., Backofen, R., Grüning, B., & Delft, F. von. (2021). ChemRxiv.
Chappell, K., Francou, B., Habib, C., Huby, T., Leoni, M., … Bouligand, J. (2021). Clinical Chemistry, hvab220.
MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging
Schapiro, D., Sokolov, A., Yapp, C., Chen, Y.-A., Muhlich, J. L., … Sorger, P. K. (2021). Nature Methods, 1–5.
miRGalaxy: Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data
Glogovitis, I., Yahubyan, G., Würdinger, T., Koppers-Lalic, D., & Baev, V. (2021). Cancers, 13(22), 5663.
Tangaro, M. A., Mandreoli, P., Chiara, M., Donvito, G., Antonacci, M., … Zambelli, F. (2021). BMC Bioinformatics, 22(15), 544.