long-read-sequencing

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

Assembly and binning of metagenomes

Assembly and intrahost/low-frequency variant calling for viral samples

uLTRA is a long-read splice aligner with high accuracy from using a guiding annotation

A pipeline for high-quality bacterial genome construction using ONT sequencing

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

An algorithm for centromere assembly using long error-prone reads

A collection of publications on comparison of high-throughput sequencing technologies.

scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions

🍊 💫 Trim, circularise and orient long read bacterial genome assemblies

NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)

Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

A long-read analysis toolbox for cancer genomics

An all-in-one genome-centric metagenomics workflow using long reads

Coronavirus (SARS-Cov-2) sequencing analysis

Linear-time de novo Long Read Assembler

Transcriptome long-read orientation with Deep Learning

MinION Open-source Nucleotide Identifier for Continuous Analysis - Software for MinION sequencing quantitative metagenomic analysis in real time