#

rrna

Here are 14 public repositories matching this topic...

tseemann / barrnap

🔬 ♌ Bacterial ribosomal RNA predictor

annotations rna hmm-model hmmer rnammer rrna ribosomal

Updated Jan 2, 2021
Perl

nf-core / ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

workflow pipeline nextflow metagenomics pacbio edna microbiome iontorrent illumina metabarcoding 16s rrna its 18s taxonomic-classification amplicon-sequencing qiime2 nf-core taxonomic-profiling

Updated Mar 21, 2023
Nextflow

pr2database / pr2database

Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

database taxonomy metabarcoding rrna eukaryotes 18s-rrna

Updated Dec 2, 2022
R

epruesse / SINA

SINA - Reference based multiple sequence alignment

bioinformatics alignment sequence 16s rrna silva

Updated Dec 13, 2020
C++

bonsai-team / matam

Mapping-Assisted Targeted-Assembly for Metagenomics

bioinformatics assembly metagenomics rrna

Updated Apr 29, 2020
Python

ifremer-bioinformatics / samba

Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

workflow pipeline nextflow edna metabarcoding 16s rrna 18s

Updated Mar 10, 2023
Nextflow

fallerlab / Ribo-ODDR

Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs

bioinformatics rna-seq computational-biology bioinformatics-pipeline ribosome-profiling riboseq bioinformatics-scripts rrna oligonucleotide bioinformatics-tool oligo-design

Updated Jan 27, 2023
Python

carden24 / V-Xtractor

Repository for V-Xtractor an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

open-source bioinformatics 16s rrna microbiome-analysis

Updated Feb 4, 2021
Perl

nlabrad / CIMS-Cyanobacterial-ITS-motif-slicer

A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.

bioinformatics help-wanted rna bacteria phylogeny phycology rrna rna-folding cyanobacteria 16s-rrna 23s 16s-seq rnafolding 16s-23s

Updated Jan 12, 2023
Python

pseudoU-BIDseq

y9c / pseudoU-BIDseq

🧪 BID-seq for detecting pseudouridine modification on RNA

rna modification mrna rrna epitranscriptomics epitranscriptome single-base pseudouridine

Updated Mar 19, 2023
Python

YaccConstructor / YC.Bio

Tools for metagenomic assembly processing.

bioinformatics parsing fsharp metagenomics secondary-structure 16s metagenomic-analysis rrna

Updated Feb 28, 2019
F#

zadyson / OTUStalker

OTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, therefore allowing the user to concentrate their efforts on the specific taxa of interest. In effect, OTUStalker is taking the place of a targeted PCR…

java gui metagenomics rdna pcr 16s rrna otu

Updated Sep 24, 2022
Java

felixgrunberger / rRNA_maturation

rrna archaea nanopore-sequencing

Updated Nov 14, 2022
R

mjy / psy

Perl libraries for handling rRNA annotated multiple sequence alignments, and more

perl secondary-structure phylogeny rrna

Updated Feb 16, 2018
Perl

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