Skip to content

Popular repositories

  1. adam Public

    ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

    Scala 936 306

  2. mango Public

    A scalable genome browser. Apache 2 licensed.

    Scala 116 30

  3. avocado Public

    A Variant Caller, Distributed. Apache 2 licensed.

    Scala 72 42

  4. Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    Shell 38 35

  5. cannoli Public

    Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.

    Scala 37 18

  6. eggo Public

    Ready-to-go Parquet-formatted public 'omics datasets

    Python 29 8

Repositories

  • mango Public

    A scalable genome browser. Apache 2 licensed.

    Scala 116 Apache-2.0 30 57 7 Updated Dec 2, 2022
  • adam Public

    ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

    Scala 936 Apache-2.0 306 31 3 Updated Dec 2, 2022
  • convert Public

    Conversions to and from Big Data Genomics Avro Formats. Apache 2 licensed.

    Java 0 Apache-2.0 5 2 0 Updated Dec 2, 2022
  • cannoli Public

    Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.

    Scala 37 Apache-2.0 18 0 0 Updated Dec 2, 2022
  • bdg-formats Public

    Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    Shell 38 Apache-2.0 35 0 0 Updated Dec 1, 2022
  • utils Public

    General utility code used across BDG products. Apache 2 licensed.

    Scala 18 Apache-2.0 26 1 0 Updated May 18, 2022
  • workflows Public

    Toil workflows for bigdatagenomics tools. Apache 2 licensed.

    Python 5 Apache-2.0 5 8 1 Updated Apr 22, 2021
  • Dockerfile 1 Apache-2.0 2 0 1 Updated Aug 23, 2020
  • deca Public

    Distributed exome CNV analyzer. Apache 2 licensed.

    Scala 3 4 9 1 Updated Oct 15, 2019
  • awesome-adam Public

    Awesome list of applications that extend Big Data Genomics ADAM. CC0 licensed.

    9 3 0 0 Updated Jul 11, 2019

Top languages

Loading…

Most used topics

Loading…