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Pull requests: scverse/scanpy

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Pull requests list

add scalex[Xiong22 Nature Communications] to scanpy.external.pp
#2355 opened Oct 19, 2022 by jsxlei Loading…
1
Make default for percent_top more permissive
#2346 opened Oct 7, 2022 by aeisenbarth Loading…
1
Add bento to ecosystem
#2334 opened Sep 20, 2022 by ckmah Loading…
3
fix broken references in the Tutorials section
#2326 opened Sep 14, 2022 by bpkwee Loading…
2
Stephen/spaceranger2.0
#2296 opened Jul 19, 2022 by stephenwilliams22 Loading…
14
I changed pheno_jaccard_ig to be a csr matrix so it is easier to save and manipulate - before it was a COO matrix which threw some errors.
#2295 opened Jul 18, 2022 by dshefter Loading…
3
Fix rank genes groups when log base is missing
Area – Differential Expression Differential expression Bug 🐛
#2283 opened Jun 20, 2022 by ivirshup • Draft
3 tasks
1.9.2
4
Fix diffmap plotting
Area - Plotting 🌺 Bug 🐛
#2280 opened Jun 15, 2022 by ivirshup • Draft
2 tasks
1.9.2
1
1
Enable matplotlib legend loc values for embeddings
Area - Plotting 🌺 Enhancement ✨
#2277 opened Jun 15, 2022 by ivirshup • Draft
2 tasks
1
1
Mask for pca
#2272 opened Jun 14, 2022 by chelseabright96 • Draft
10
Fix diffmap plotting
#2255 opened May 12, 2022 by Koncopd Loading…
12
Volcano
#2241 opened Apr 20, 2022 by eburke21 Loading…
2
Fixturize data in tests, group fixtures into modules
#2235 opened Apr 13, 2022 by flying-sheep Loading…
1
7
Doc overhaul
#2220 opened Apr 5, 2022 by adamgayoso Loading…
4 of 6 tasks
25
remove pre-commit workflow
#2206 opened Apr 4, 2022 by flying-sheep Loading…
3
Inherit layer argument in _highly_variable_genes_single_batch when using sc.pp.highly_variable_genes
#2183 opened Mar 18, 2022 by Ngort Loading…
3
Gene selection plot for Pearson Residuals
#2176 opened Mar 15, 2022 by jlause Loading…
2
add n_top_genes argument to rank_genes_groups_df
#2145 opened Feb 18, 2022 by fbnrst Loading…
1
Allow users to pass inner to sc.pl.violin when multi_panel=True
Area - Plotting 🌺
#2083 opened Dec 14, 2021 by ivirshup • Draft 1.10.0
2
allowing dotplot to use two variables in groupby as x and y axis
Area - Plotting 🌺
#2055 opened Nov 20, 2021 by zhangguy Loading…
@ivirshup
2
Pass delimiter to read_csv
Area - IO Reading and writing Enhancement ✨
#1969 opened Jul 29, 2021 by WeilerP Loading…
1
5
bug fix: hue in sc.pl.violin
#1822 opened Apr 29, 2021 by AnnaChristina Loading…
5
Add Shannon Component Analysis
#1780 opened Apr 6, 2021 by bendemeo Loading…
5
Reorganize plotting test outputs
Area - Plotting 🌺 Development Process 🚀
#1772 opened Mar 31, 2021 by ivirshup Loading…
1 of 3 tasks
1
highly deviant genes implementation
Enhancement ✨ Needs info❔ More information needed
#1765 opened Mar 26, 2021 by ktpolanski Loading…
2
ProTip! Updated in the last three days: updated:>2022-11-07.