Official git repository for Biopython (originally converted from CVS)
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Official code repository for GATK versions 4 and up
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
A collaboratively written review paper on deep learning, genomics, and precision medicine
Data intensive science for everyone.
tools for working with genome variation graphs
Scripts to download genomes from the NCBI FTP servers
Python and C++ code for reading and writing genomics data.
A high-performance, Pythonic language for bioinformatics
A comprehensive tutorial about GWAS and PRS
Python library to handle Gene Ontology (GO) terms
Python library to facilitate genome assembly, annotation, and comparative genomics
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
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