BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

EasyPubMed is an extension to make new PubMed easy to use

I, Librarian - open-source version of a PDF managing SaaS.

Findpapers: A tool for helping researchers who are looking for related works

NLP framework in python for entity recognition and relationship extraction

Tools to scrape publication metadata from pubmed, arxiv, medrxiv and chemrxiv.

A high performance bibliographic information service

SciFive: a text-text transformer model for biomedical literature

Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

A framework for keeping biomedical text mining result up-to-date

ReCiter: an enterprise open source author disambiguation system for academic institutions

Retrieve and process PubTator annotations

Data Collection API for pubmed

Automatic generation of reviews of scientific papers

A Python package to download full article PDFs from OA publications

Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.

R Interface to Europe PMC RESTful Web Service

A web scrapping method to extract journal information from PubMed and Google Scholar using Python.