Skip to content
@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

Pinned Loading

  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 351 151

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 23 14

Repositories

Showing 10 of 413 repositories
  • deep-neurographs Public

    A Python package that utilizes machine learning to correct split mistakes in a fragmented neuron segmentation.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Feb 7, 2025
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 58 23 13 4 Updated Feb 6, 2025
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 6, 2025
  • TEM_config Public
    AllenInstitute/TEM_config’s past year of commit activity
    0 0 1 0 Updated Feb 6, 2025
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 25 9 285 10 Updated Feb 6, 2025
  • TEM_comms Public

    Pigeon messages for the next generation TEM imaging system

    AllenInstitute/TEM_comms’s past year of commit activity
    Python 0 BSD-3-Clause 2 1 0 Updated Feb 6, 2025
  • sciduck Public
    AllenInstitute/sciduck’s past year of commit activity
    Jupyter Notebook 1 4 5 1 Updated Feb 6, 2025
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 4 BSD-3-Clause 1 66 3 Updated Feb 6, 2025
  • DemoMkdocsSite Public

    Demo site for documentation. Focused on having nested repositories and building with mkdocs

    AllenInstitute/DemoMkdocsSite’s past year of commit activity
    0 0 0 0 Updated Feb 6, 2025
  • ctree Public

    Python helper functions to work with the Tasic et al. 2018 hierarchical cell type tree

    AllenInstitute/ctree’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Feb 6, 2025