A command line tool to transform a DICOM volume into a 3d surface mesh (obj, stl or ply). Several mesh processing routines can be enabled, such as mesh reduction, smoothing or cleaning. Works on Linux, OSX and Windows.

AiAi.care project is teaching computers to "see" chest X-rays and interpret them how a human Radiologist would. We are using 700,000 Chest X-Rays + Deep Learning to build an FDA 💊 approved, open-source screening tool for Tuberculosis and Lung Cancer. After an MRMC clinical trial, AiAi CAD will be distributed for free to emerging nations, charitable hospitals, and organizations like WHO 🌏 We will also release our pretrained models and weights as Medical Imagenet.

COVID-19 Detection Chest X-rays and CT scans: COVID-19 Detection based on Chest X-rays and CT Scans using four Transfer Learning algorithms: VGG16, ResNet50, InceptionV3, Xception. The models were trained for 500 epochs on around 1000 Chest X-rays and around 750 CT Scan images on Google Colab GPU. A Flask App was later developed wherein user can upload Chest X-rays or CT Scans and get the output of possibility of COVID infection.

Image-based COVID-19 diagnosis. Links to software, data, and other resources.

CNN's for bone segmentation of CT-scans.

U-Net for biomedical image segmentation

Software for processing output of Scanco uCT machines/ any ISQ or TIF producing machine, and producing data. See instructions.pdf for full explaination.

CTSegNet is an end-to-end 3D segmentation package for large X-ray tomographic datasets using 2D fully convolutional neural networks (fCNN).

Medical software for Processing multi-Parametric images Pipelines

Fully automated code for Covid-19 detection from CT scans from paper : https://doi.org/10.1101/2020.06.08.20121541

A simple privacy-focused web panel for labeling CT Scan's slices

2D and 3D viewers for a series of CT scans.

Workflow-centred open-source fully automated lung volumetry in chest CT.

CT haemorrhage classification problem from Kaggle

Automatic midplane finder and tissue segmentation for head CT scans

Tools to interpret CT scan of halite

Visualization of Iterative Radon Transfrom Using Arithmetic Libraries (V.I.R.T.U.A.L)

Software for the OCT Scanner Project

The CT (computed tomography) simulator for the IT in medicine's lab.

Classifying images in the test set containing CT scans of patients infected/not-infected by COVID19.

A simple code useful for covid-19 detection on CT Scans