#
samtools
Here are 63 public repositories matching this topic...
unode
commented
Feb 28, 2019
When working with very large SAM files it is often convenient to remove sequence and quality information to reduce storage and improve I/O.
Following from this it would be convenient to have a stripSeqQual function that replaces the two fields with *.
Multi-sample somatic variant caller
docker
bam-files
pipeline
nextflow
ngs
regression
variants
somatic-mutations
samtools
negative-binomial-regression
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Updated
Jun 15, 2020 - R
WebAssembly modules for common genomics utilities
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Dec 13, 2020 - JavaScript
A playground for running the samtools genomics utility in the browser using WebAssembly
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May 6, 2020 - HTML
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Nov 9, 2019 - Forth
Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphones https://nanoporetech.com
android
toolkit
bioinformatics-pipeline
samtools
sequence-alignment
minimap2
nanopolish
mobile-genomics
portable-genomics
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Updated
Nov 23, 2020 - Java
The ChIP-Seq peak calling algorithm using convolution neural networks
bioinformatics
tensorflow
gpu
docker-image
chip-seq
atac-seq
nvidia-docker
convolutional-neural-network
samtools
cnn-model
ngs-analysis
peak-calling
progressbar2
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Updated
Nov 6, 2020 - Python
Collecting Genotypes from ENA and make their SNPs
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Updated
Nov 15, 2020 - Python
RNAseq pipeline for alternative splicing junctions
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Updated
Feb 3, 2020 - R
CREST-seq peak calling.
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Jun 26, 2017 - C++
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Jul 30, 2020 - Python
Take information about snps on short sequence reads and accurately place the snps in a reference genome
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Updated
Jun 26, 2020 - Python
fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data
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Updated
Sep 4, 2020 - C
A nodejs-based service for requests for tabix-indexed genomic data
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Updated
Nov 12, 2019 - JavaScript
rna-seq
deseq2
star
samtools
featurecounts
bowtie2
cutadapt
fastqc
rna-seq-pipeline
htseq-count
tophat2
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Updated
Dec 27, 2019 - Jupyter Notebook
Small test to compare AWS and HPC on a very simple workflow
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Updated
Mar 15, 2018 - Shell
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
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Updated
Mar 27, 2020 - Shell
script to convert bam2cram and reverse using find and samtools
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May 17, 2019 - Shell
Snakemake pipeline for Popoolation and Popoolation2
workflow
snakemake
genomics
ngs
population
samtools
popoolation
popoolation2
bowtie2
snakemake-workflows
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Updated
Apr 8, 2019 - Python
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