Here are
319 public repositories
matching this topic...
Singularity: Application containers for Linux
A DSL for data-driven computational pipelines
Updated
Aug 5, 2020
Groovy
Simplify HPC and Batch workloads on Azure
Updated
Aug 4, 2020
Python
Updated
Aug 6, 2020
Python
Container-native workflow execution and automation engine.
Updated
Aug 10, 2020
Python
A docker image for converting docker images to singularity images.
Updated
Jul 21, 2020
Shell
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Updated
Jan 27, 2020
Nextflow
Molecular dynamics and Monte Carlo soft matter simulation on GPUs.
The Singularity implementation of the Kubernetes Container Runtime Interface
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
Updated
Aug 7, 2020
Nextflow
Singularity implementation of k8s operator for interacting with SLURM.
server for storage and management of singularity images
Updated
Aug 1, 2020
JavaScript
Snakemake pipelines for nanopore sequencing data archiving and processing
Updated
Aug 4, 2020
Python
A extremely fast ioc container for high performance applications
Nextflow pipeline for analysis of direct RNA Nanopore reads
Tutorial for using Singularity containers
📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
Updated
Aug 10, 2020
Dockerfile
Hex-mesh simplification and optimization
Create container images for using Julia packages (especially useful in environments without Internet access)
Updated
Jun 25, 2020
Julia
Sherlock Port Forwarding Utility
Updated
May 18, 2020
Shell
A Simple Way of Creating Job Workflows in Go running in Processes, Containers, Tasks, Pods, or Jobs
streamlined singularity python client (spython) for singularity
Updated
Jun 1, 2020
Python
orchestration for singularity containers (under development)
Updated
Jun 1, 2020
Python
scientific filesystem: a filesystem organization for scientific software and metadata
Updated
Feb 24, 2020
Python
Nextflow basic tutorial for newbie users
Updated
Jun 17, 2018
Nextflow
software to generate a reproducible container with a battery of experiments
Updated
Jul 15, 2020
Python
COMP Superscalar (COMPSs) is a framework which aims to ease the development and execution of applications for distributed infrastructures, such as Clusters, Grids and Clouds.
Generic germline variant annotation pipeline
Updated
Jul 1, 2020
Python
convert a singularity image back to Docker, full circle! #containerfriends
Updated
May 29, 2020
Shell
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