association-studies

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Here are 12 public repositories matching this topic...

YinLiLin / CMplot

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📊 Circular and Rectangular Manhattan Plot

manhattan-plot association-studies

Updated Jul 6, 2021
R

aehrc / VariantSpark

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machine learning for genomic variants

emr aws bioinformatics gwas genome random-forest notebook vcf databricks association-studies variant-spark variantspark

Updated Apr 25, 2021
JavaScript

ramiromagno / gwasrapidd

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gwasrapidd: an R package to query, download and wrangle GWAS Catalog data

r trait human snp gwas-catalog rest-client association-studies trait-ontology

Updated Jan 4, 2021
R

Poissonfish / iPat

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iPat allows you to perform GWAS and GS with drags and clicks!

gui gwas genomics genome analysis vcf hapmap genome-analysis genomic-data-analysis gene-prediction association-studies ipat

Updated Sep 9, 2020
Java

fuxialexander / marvel

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Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape

bioinformatics pipeline nextflow disease marvel wgs association-studies epigenomics noncoding

Updated Feb 3, 2021
Python

swvanderlaan / MetaGWASToolKit

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A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies

gwas genome variants meta-analysis indels chromosome association-studies gwas-dataset allele-frequencies allele-counts

Updated Jul 13, 2021
Shell

xinghuq / DeepGenomeScan

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DeepGenomeScan: A Deep Learning Approach for Whole Genome Scan (WGS) and Genome-wide Association Studies (GWAS)

gwas deep-learning genome convolutional-neural-networks association-studies genome-scan

Updated Jun 11, 2021
R

daissi / thesias

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THESIAS: Testing Haplotype Effects In Association Studies

bioinformatics genomics java-interface association-analysis association-studies haplotype

Updated Dec 15, 2020
C

mwjjeong / cwas

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Category-wide association study (CWAS) (Werling et al., 2018; An et al., 2018)

bioinformatics next-generation-sequencing variant-annotation association-studies

Updated Jul 27, 2021
Python

swvanderlaan / covid19_hg

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Reviewing the (preliminary) summary statistics from the COVID19 Host Genetics Initiative meta-analysis of genome-wide association studies (GWAS).

gwas summary-statistics association-studies genome-wide covid-19 covid19

Updated May 17, 2020
HTML

Yun-Ching-Chen / BOMP

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Phenotype-Gene Association Test for Case-Control Study using NGS-Sequencing Data

statistical-tests genome-sequencing association-studies

Updated Jan 23, 2020
Java

GWASpi / GWASpi

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A tool to perform Genome-Wide Association Studies

java pipeline association-studies genome-wide

Updated Jul 29, 2015
Java

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