Here are
177 public repositories
matching this topic...
ChIP-seq analysis notes from Ming Tang
Updated
Apr 29, 2021
Python
MACS -- Model-based Analysis of ChIP-Seq
Updated
May 27, 2021
Python
Tools to process and analyze deep sequencing data.
Updated
Jun 30, 2021
Python
Customizable workflows based on snakemake and python for the analysis of NGS data
Updated
Aug 19, 2021
Python
A collection of Galaxy-related training material
AQUAS TF and histone ChIP-seq pipeline
Updated
Aug 30, 2019
Java
ChIP-seq peak-calling, QC and differential analysis pipeline.
Updated
Jul 28, 2021
Nextflow
a snakemake pipeline to process ChIP-seq files from GEO or in-house
Updated
Apr 17, 2020
Python
Publication quality NGS track plotting
Updated
May 14, 2021
Python
A graphical user interface for distributed data processing of high throughput genomics
Updated
Aug 31, 2021
JavaScript
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Updated
Aug 4, 2021
Python
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Updated
Sep 1, 2021
Python
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Updated
Apr 22, 2021
HTML
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
Updated
Jul 28, 2021
Python
(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
Updated
Nov 21, 2018
Python
Go / Golang Bioinformatics Library
deepStats: a stastitical toolbox for deeptools and genomic signals
Tools for querying and analysis of genomic data
Updated
Jul 23, 2021
Perl
A python package and a set of shell commands to handle GTF files
Updated
Aug 31, 2021
Python
Summer school course materials collection
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
CWL tools and workflows for GGR
Updated
Dec 17, 2020
Common Workflow Language
A robust model for quantitative comparison of ChIP-Seq data sets.
Updated
May 18, 2020
Python
A Python package for fast operations on 1-dimensional genomic signal tracks
Updated
Apr 3, 2020
Python
API for HOMER in R for Genomic Analysis using Tidy Conventions
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
Bioinformatics library in Kotlin
Updated
Jul 16, 2021
Kotlin
MAnorm2 for Normalizing and Comparing ChIP-seq Samples
Updated
Jun 15, 2021
HTML
AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
An automated ChIP-seq pipeline using Nextfow
Updated
Feb 16, 2021
Nextflow
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