Cancer metastasis detection with neural conditional random field (NCRF)
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Jul 19, 2021 - Python
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pathology
Here are 75 public repositories matching this topic...
QuPath - Bioimage analysis & digital pathology
groovy
opencv
machine-learning
imagej
javafx
image-processing
histology
cell-segmentation
bioimage-informatics
digital-pathology
pathology
whole-slide-imaging
cell-analysis
computational-pathology
bioimage-analysis
tissue-microarray-analysis
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Jul 21, 2021 - Java
The PatchCamelyon (PCam) deep learning classification benchmark.
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Apr 28, 2020 - Python
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
weakly-supervised-learning
pathology
whole-slide-imaging
computational-pathology
histopathology
data-efficient
mahmoodlab
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Updated
Jul 14, 2021 - Python
cGAN-based Multi Organ Nuclei Segmentation
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May 8, 2019 - Python
Evidence SARS-CoV-2 Emerged From a Biological Laboratory in Wuhan, China
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May 21, 2020 - HTML
Fusing Histology and Genomics via Deep Learning - IEEE TMI
genomics
fusion
transcriptomics
pathology
multimodal
histopathology
computational-pathogenomics
pathomic
multimodal-network
mahmoodlab
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May 26, 2021 - Jupyter Notebook
AI-based pathology predicts origins for cancers of unknown primary - Nature
cancer-imaging-research
cancer-research
histology
pathology
cancer-detection
wsi
histopathology
wsi-images
mahmoodlab
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Updated
May 6, 2021 - Python
Deep-Learning for Tidemark Segmentation in Human Osteochondral Tissues Imaged with Micro-computed Tomography
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Aug 30, 2019 - Python
CoRA Docs
data-science
data-visualization
forensics
dna
pairs
data-analytics
anomaly
anthropology
bones
commingled-human-remains
pathology
osteology
trauma
cora
articulations
human-remains
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Jun 9, 2021 - HTML
Brazilian Agricultural Research Corporation (EMBRAPA) fully annotated dataset for plant diseases. Plug and play installation over PiP.
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Mar 22, 2019 - Python
Whole slide digital pathology image tissue localization
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Jun 8, 2021 - Python
Digital pathology whole slide image analysis toolbox
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Apr 13, 2021 - Python
Repo for Tang et al, bioRxiv 454793 (2018)
machine-learning
deep-learning
convolutional-neural-networks
immunohistochemical-images
alzheimers-disease
dementia
saliency-map
pathology
medical-image-analysis
plaques
explainable-ai
interpretable-machine-learning
amlyoid-plaques
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Mar 24, 2019 - Jupyter Notebook
DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep learning
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Dec 22, 2020 - Jupyter Notebook
Raccoon is a NoSQL-based medical image archive for managing the DICOM images.
mongodb
fhir-server
dicomweb
qido-rs
bluelight
wado-uri
pathology
wsi
fhir-resources
fhir-imagingstudy
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Jul 10, 2021 - C++
LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)
deep-learning
annotations
python3
openseadragon
openslide
digital-pathology
pathology
labeltool
pathology-image
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Jun 28, 2021 - JavaScript
a toolbox for manipulation of digital pathology slides and annotations
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Aug 11, 2020 - Jupyter Notebook
Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
pytorch
libvips
preprocessing
fastai
openslide
pathology
whole-slide-imaging
wsi
histopathology
pyvips
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Sep 3, 2020 - Python
Machine learning methods for the prediction of pathology in protein mutations, as in the PMut predictor.
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Jan 8, 2018 - Python
MinION Open-source Nucleotide Identifier for Continuous Analysis - Software for MinION sequencing quantitative metagenomic analysis in real time
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Oct 11, 2020 - Python
Repository for Kubach et al. bioRxiv/2019/804682 (2019)
machine-learning
deep-learning
grad-cam
convolutional-neural-network
medical-images
epilepsy
pathology
explainable-artificial-intelligence
guided-grad-cam
histopathology
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Jun 8, 2021 - Python
A PyTorch implementation for differentiating between different types of lymphoma cancer
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Jan 5, 2019 - Jupyter Notebook
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
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May 21, 2021 - Python
The implementation of our pricai18 paper "Multiple Visual Fields Cascaded Convolutional Neural Network for Breast Cancer Detection."
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Aug 17, 2019 - Python
Information retrieval from cancer pathology reports using deep learning and NLP
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Aug 18, 2019
Preprocessing module for large histological images
medical-imaging
cut
preprocess
openslide
medical-image-processing
tissue-classification
pathology
medical-image-analysis
histological-images
pathology-image
tissue-analysis
histological-slides
slide-image
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Jun 1, 2021 - Python
Deep Learning Inferred Multiplex ImmunoFluoroscence for IHC Quantification
deep-learning
multiplex
immunohistochemical-images
pathology
multitask-learning
pathology-image
pathology-gan
immunohistochemistry
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Jun 21, 2021 - Python
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