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18s

Here are 11 public repositories matching this topic...

pr2database / pr2database

Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

database taxonomy metabarcoding rrna 18s eukaryotes

Updated Dec 9, 2021
R

itsmisterbrown / microfiltR

accessory functions for processing microbial community data

microbiome 16s microbiome-analysis phyloseq 18s marker-gene-analysis

Updated Jun 27, 2019
R

ifremer-bioinformatics / samba

Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

workflow pipeline nextflow edna metabarcoding 16s rrna 18s

Updated Dec 8, 2021
Nextflow

adriaaula / dada2_guidelines

A repository with a general dada2 pipeline for amplicon processing

amplicon 16s 18s dada2

Updated Jul 28, 2021
R

terrimporter / 18SClassifier

This repository contains 18S reference sets that can be used with the RDP Classifier to classify 18S rDNA metabarcode sequences.

rdna metabarcoding 18s rdpclassifier

Updated May 7, 2021
Perl

vaulot / Ribeiro_CARBOM_ISME_2018

Supplementary files for Ribeiro et al. ISME 2018

brazil microbial-communities metabarcoding 18s phytoplankton nifh

Updated Feb 26, 2020
Shell

nioo-knaw / hydra

Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)

snakemake metagenomics 16s metagenomic-analysis its 18s amplicon-sequencing

Updated Jul 8, 2019
Python

terrimporter / JesseHoage2018

This repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).

rdna coi metabarcoding its2 18s mtdna rdpclassifier

Updated Jul 12, 2018
Perl

GenomicaMicrob / chimera_detector

A simple script to detect chimeric sequences in 16S/18S metagenomic samples.

metagenomics chimera 16s 18s microbial-ecology

Updated Dec 7, 2017

GenomicaMicrob / metagenomic_pipeline

Description of the metagenomic pipeline we have for analysis of 16S and 18S amplicon NGS

classifier database metagenomics chimera 16s 18s microbial-ecology

Updated May 22, 2018

GenomicaMicrob / mg_classifier

Super fast script for classifying metagenomic 16S/18S sequences

classifier 16s metagenomic-analysis 18s microbial-ecology

Updated Dec 7, 2017
Perl

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