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nf-samplesheet-conversion Public archive
A script to validate a samplesheet and convert it to a Nextflow channel.
Groovy 9
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test-datasets Public
Forked from nf-core/test-datasets
Test data to be used for automated testing with the nf-core pipelines
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configs Public
Forked from nf-core/configs
Config files used to define parameters specific to compute environments at different Institutions
Nextflow
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nf-cmgg-preprocessing Public
Forked from CenterForMedicalGeneticsGhent/nf-cmgg-preprocessing
Preprocessing workflow for sequencing data at CMGG
Nextflow
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nf-cmgg-germline Public
Forked from CenterForMedicalGeneticsGhent/nf-cmgg-germline
A nextflow pipeline for calling and annotating variants
Nextflow
1,148 contributions in the last year
Contribution activity
March 2023
Created 13 commits in 2 repositories
Created a pull request in nf-core/modules that received 1 comment
Update subworkflow to adhere to the guidelines
PR checklist Closes #XXX This comment contains a description of changes (with reason). If you've fixed a bug or added code that should be test…
Opened 11 other pull requests in 2 repositories
nf-core/modules
4
open
6
merged
- update bedtools/makewindows
- update vcf extract relate somalier to guidelines
- update somatic tumor normal vc subwf to guidelines
- update fastq_contam_seqtk_kraken to guidelines
- update fastq align bwaaln to guidelines
- update fasta binning concoct to guidelines
- update bam stats samtools to guidelines
- update bam markduplicates subwf to guidelines
- update vcf_annotate_snpeff to guidelines
- new module paragraph/vcf2paragraph
CenterForMedicalGeneticsGhent/svtk
1
merged
Reviewed 24 pull requests in 5 repositories
nf-core/modules
17 pull requests
- Glimpse2 concordance
- Freyja subworkflow with required modules
- Pairtools sample
- Subworkflow: parallelise vep
- add module goleft/indexsplit
- New module Glimpse2 phase
- Glimpse2 chunk
- Sambamba markdup
- Fix tiara/tiara
- Updating missing description outputfiles from quast module
- Update bakta to 1.7.0
- Glimpse2 splitref
- Cooltools eigscis
- New module SHAPEIT5_phaserare
- Update taxpasta modules to v.0.2.1
- new module paragraph/vcf2paragraph
- bump picard version across the board
CenterForMedicalGeneticsGhent/nf-cmgg-germline
4 pull requests
nextflow-io/nf-validation
1 pull request
CenterForMedicalGeneticsGhent/svtk
1 pull request
CenterForMedicalGeneticsGhent/nf-cmgg-structural
1 pull request
Created an issue in nf-core/nf-co.re that received 6 comments
Fix Fairsharing link not working
The FAIRsharing.org link is broken here: https://nf-co.re/docs/usage/data_management#choosing-a-repository