Here are
123 public repositories
matching this topic...
Rapid comparison and dereplication of genomes
Updated
Jun 24, 2021
Python
Build a partitioned pangenome graph from microbial genomes
Updated
Jun 28, 2021
Python
Rapid determination of appropriate reference genomes.
Updated
Jul 28, 2021
Python
An easy-to-use C++ application to count bacterial colonies (i.e. CFU).
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Updated
Jul 28, 2021
Python
Collection of commonly used RDP Tools for easy building
Updated
Dec 30, 2020
Makefile
Collection of scripts for bacterial genomics
Metagenomic pipeline and other general scripts used in the lab.
Updated
Feb 11, 2021
Perl
A free, open-source and independent R package to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using evidence-based methods.
A pipeline to select optimal markers for microbial phylogenomics, population genetics and genomic taxonomy
Updated
Jan 31, 2021
Perl
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
Updated
Jul 23, 2021
Shell
creating hybrid-gene phylogenetic trees for diversity analyses
Updated
Feb 15, 2019
Python
scripts and notes for learning
Updated
Jul 6, 2021
Jupyter Notebook
A comprehensive R package for microbiome analysis.
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
Updated
May 25, 2021
Python
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
Updated
Sep 30, 2020
Python
Simple counting of bacterial colonies from pictures of plates.
Updated
Mar 5, 2021
Processing
Bacterial whole genome sequencing (WGS) analysis
Updated
Mar 12, 2020
Shell
Updated
Sep 19, 2018
Python
Bioinformatics: scripts and tools in use at the Microbiology and Infection Unit at the University of Warwick - and a place to seek out help!
Updated
Jun 16, 2017
Python
a platform for the collection, storage, retrieval, and analysis of experimental data for laboratory workflows
Updated
Aug 11, 2021
Perl
Bacterial video tracking & analysis
Updated
Dec 3, 2020
Python
A Microbial Ontology of Phenotypic and Metabolic Characters, Assays, and Culture Media Found in Prokaryotic Taxonomic Descriptions
R package offering functionality for the advanced analysis of microbial flow cytometry data
MicroRaman is an R package to process microbial Raman Spectroscopy data
SPIRO is a Smart Plate Imaging Robot
Updated
Jul 23, 2021
Python
Updated
Dec 14, 2020
Python
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https://github.com/chasemc/IDBacApp/blob/a5c66181598c9276da7c79d6fea029f240522583/R/hierMetaInputModule.R#L21-L36